JESPR0209, JESPR0209 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0209
AliasJESPR209
JESPR0209=CM0008
CM0008
Genbank IDAF351447
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351447.1
Source Typegenomic
Repeat Motif(GA)41
Primer 1JESPR0209_F: ATTGAGAGGCATTTTGGTC
Primer 2JESPR0209_R: AGATGACTAAAAATTGTGCC
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351447
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:26710507..26710686 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:23184713..23184873 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:28655224..28655379 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr12chromosomeDt_chr12:32218201..32218384 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_D04chromosomeGhir_D04:24210446..24210627 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:23844289..23844422 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:23857770..23857950 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:7219311..7219598 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:23408674..23408860 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:23845983..23846545 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10492supercontigscaffold10492:42155..42268 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3347supercontigscaffold3347:82632..83051 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1401supercontigscaffold1401:36866..36971 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13873supercontigscaffold13873:186768..187330 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:6759231..6759336 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:26049202..26049315 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017626.1chromosomeCM017626.1:23214972..23215131 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:24939811..24939952 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D04chromosomeD04:24591894..24592075 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:24614564..24614742 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351447.1AF351447.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A52JESPR209View
2Monsanto SSR Bin Map, (2009)AD_ch22_Dt.04N/A41JESPR209View
Sequence
>JESPR0209 ID=JESPR0209; Name=JESPR0209; organism=Gossypium hirsutum; type=genetic_marker; length=182bp
ATTGAGAGGCATTTTGGTCNAGAAAAAGGGGTCAGAATANTTGCTAAAAA
AGAGCCAAAAATTGGCTGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGGATGCATTAGGCACAATTTTTAGTCATCT