JESPR0199, JESPR0199 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0199
AliasJESPR199
Genbank IDAF351437
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351437.1
Source Typegenomic
Repeat Motif(GAA)8
Primer 1JESPR0199_F: GGCAAAGTCCAAAGGCGGTGG
Primer 2JESPR0199_R: CCATCAAAACAGGTGATTGTATTTGG
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351437
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:58700866..58701103 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:97757634..97757880 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:55074525..55074762 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:94644112..94644358 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:4498650..4498880 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:3860984..3861212 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:4981877..4982118 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:50145722..50145959 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:6109811..6110048 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:52012126..52012363 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:55176442..55176679 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:83148260..83148506 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:57603512..57603749 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:102436243..102436489 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:56841382..56841619 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:102641673..102641919 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:57683095..57683332 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:55847614..55847851 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:97508328..97508574 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8514supercontigscaffold8514:136705..136951 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12014supercontigscaffold12014:88419..88656 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:54130784..54131021 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:97457724..97457970 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:55943253..55943490 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:96650515..96650761 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:55892985..55893222 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:97885553..97885799 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:101577852..101578107 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:58751295..58751532 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:56455699..56455936 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:97045229..97045475 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:58073997..58074234 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:104156773..104157019 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:105176354..105176597 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:112267723..112267964 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:53239097..53239328 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:87753952..87754189 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:53574760..53575003 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:41528822..41529571 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08_1721057chromosomeChr08_1721057:392..632 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:55182715..55182958 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:38561437..38561674 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08_1690555chromosomeChr08_1690555:1261..1498 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:36924771..36925011 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:108693052..108693288 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:86878832..86879069 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:167274294..167274531 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeJESPR0199:1..586 .
Chr08:52631120..52631690 +		n/a
Chr8chromosomeJESPR0199:1..586 .
Chr8:8717174..8717744 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351437.1AF351437.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0199 ID=JESPR0199; Name=JESPR0199; organism=Gossypium hirsutum; type=genetic_marker; length=247bp
GGCAAAGTCCAAAGGCGGTGGATCAAACATGTTGATCGTCAATCTGGGGA
AGAACATGTCATACGAAAATAGAACAATCTTGTATTTCTAGAAGAAAAAA
GAAGAAGAAGAAGAAGAAGAAGAAAAGCATAATTTGTATATGTATATCTG
TTTCAACTTTCTTGATCTTGACTATTGACTTTTATAGGAATTTGAACCTG
AAAATTGTTTGGAACAAGTTTCCAAATACAATCACCTGTTTTGATGG