JESPR0196, JESPR0196 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0196
AliasJESPR196
Genbank IDAF351434
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351434.1
Source Typegenomic
Repeat Motif(CTT)6
Primer 1JESPR0196_F: CCCTAACACCTCTCAGTTTCACAGC
Primer 2JESPR0196_R: GGGGGCTGCTGATGGAGTTAAGACC
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351434
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:46598173..46598443 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:66492913..66493180 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:43792298..43792565 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:66359265..66359532 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:23077537..23077804 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:31742119..31742392 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:95413014..95413278 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:22986601..22986868 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:50745347..50745614 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:75084325..75084595 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:98763316..98763583 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:44167199..44167469 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:61045135..61045402 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:46063962..46064232 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:71057887..71058154 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:46714174..46714444 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:70588136..70588403 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:47469984..47470254 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:68200073..68200340 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:44821451..44821721 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:64473847..64474114 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold24652supercontigscaffold24652:43895..44162 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold24652supercontigscaffold24652:40245..40512 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:44436289..44436556 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:66164928..66165195 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:45700420..45700687 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:67627019..67627286 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:46551133..46551403 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:67526696..67526963 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:47737473..47737740 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:71455362..71455629 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:45215820..45216090 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:67143375..67143642 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:48214921..48215191 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:71408810..71409077 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:40270791..40271058 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:39229098..39229362 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:40717594..40717861 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:32988938..32989204 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:42969361..42969628 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:31516523..31516790 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:27795073..27795340 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:44328204..44328468 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:28503618..28503885 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:23821606..23821873 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:29750982..29751249 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:86563212..86563479 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:76821238..76821505 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:74958338..74958603 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351434.1AF351434.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0196 ID=JESPR0196; Name=JESPR0196; organism=Gossypium hirsutum; type=genetic_marker; length=271bp
CCCTAACACCTCTCAGTTTCACAGCTTTTATCAATTGCTCCATTGAGACT
GCCTCAAATCTTTCTTGGAACTCAGAATTTGCTTCAACTCTTCCTGTGTC
ACCACAAGTCTTATTCTCACTACCCCATTTTTGGATTCACCTTGTTTCCC
TGATCTATCATCACCACTGTTTTCTTCATTTAAGTTGAATCTCACCACCT
TCTTCTTCTTCTTCTTATTCGTTTTCTTCTCCATGTTGTTGTTGTTGGTC
TTAACTCCATCAGCAGCCCCC