JESPR0194, JESPR0194 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0194
AliasJESPR194
Genbank IDAF351432
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351432.1
Source Typegenomic
Repeat Motif(GAA)11
Primer 1JESPR0194_F: GAGTTTATTGAGAAAGGCTTTCC
Primer 2JESPR0194_R: CTCAAAGTGGCTGTGCTTTG
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351432
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:59175653..59175827 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:111475850..111476035 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:53973599..53973773 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:106469362..106469556 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:52141833..52142008 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:54820602..54820779 +Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:119689587..119689760 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:8908348..8908519 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:14533359..14533527 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:34989229..34989403 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:32578782..32578970 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:55508346..55508520 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:94742716..94742904 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:57665789..57665963 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:113905102..113905287 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:56738287..56738461 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:116901748..116901936 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:56874599..56874773 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:115816733..115816921 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:54147837..54148011 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:111711308..111711496 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:91668247..91668438 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1139supercontigscaffold1139:207405..207579 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13168supercontigscaffold13168:15768..15959 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:54154084..54154258 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:105324755..105324946 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:54347248..54347422 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:108550087..108550278 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:54669132..54669312 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:111641809..111641982 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:57645525..57645702 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:116641744..116641905 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:54692786..54692960 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:109670261..109670449 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:57638726..57638900 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:118012827..118013012 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:117207558..117207731 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:119353720..119353893 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:51906373..51906548 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:14877305..14877473 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:54174516..54174679 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:41753358..41753529 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:37565965..37566136 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:35608670..35608844 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:30498924..30499095 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:36249941..36250115 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:13804325..13804500 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeChr08:5957313..5957472 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351432.1AF351432.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A101.07JESPR194View
2Monsanto SSR Bin Map, (2009)AD_ch06_At.06N/A61JESPR194View
3AD-genome wide Reference Map (2009)AD_ch06_At.06N/A87jespr0194View
4TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A58.49JESPR194-190View
5TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A56.8JESPR194-190View
Sequence
>JESPR0194 ID=JESPR0194; Name=JESPR0194; organism=Gossypium hirsutum; type=genetic_marker; length=186bp
GAGTTTATTGAGAAAGGCTTTCCCTTTCAAGTTTTCATAAGGACGAACAA
AGACAAAACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAGC
AAACAAACAAATAAAGGGTGTAAATAAGGAAGGGGTTTGGACTTTTGGGG
TTCCTTATTGATGGAGCAAAGCACAGCCACTTTGAG