JESPR0175, JESPR0175 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0175
AliasJESPR175
Genbank IDAF351413
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351413.1
Source Typegenomic
Repeat Motif(CTT)12
Primer 1JESPR0175_F: CCCCTATTGGCTGCTGAAAG
Primer 2JESPR0175_R: GTTTCTTTTTTTTTTCCCCTGTA
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351413
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:29809580..29809768 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:30796223..30796415 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:40636078..40636271 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:26109307..26109500 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:28369162..28369355 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:29013993..29014186 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:28106142..28106333 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:28865455..28865648 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold538supercontigscaffold538:195854..196042 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:29790739..29790927 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:29908271..29908459 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:29698078..29698257 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:32974219..32974418 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:29780947..29781127 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:29640119..29640311 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:29170376..29170585 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:30826840..30827034 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:9900780..9900938 -Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:26601746..26601907 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351413.1AF351413.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A122.29JESPR175View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch13_At.13N/A20.4JESPR175View
3Monsanto SSR Bin Map, (2009)AD_ch13_At.13N/A81JESPR175View
Sequence
>JESPR0175 ID=JESPR0175; Name=JESPR0175; organism=Gossypium hirsutum; type=genetic_marker; length=195bp
CCCCTATTGGCTGCTGAAAGAAATTGTTACCCCAATTTTTGAATAATTAA
ATTGATAATGATTAANAACAGTTACCAAAAGTTCTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTTTTTTTTTTAATTTGAAAGCAGNGTTTGA
TCATTAATCATATATATATGTNTACAGGGGAAAAAAAAAAGAAAC