JESPR0163, JESPR0163 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0163
AliasJESPR163
Genbank IDAF351401
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351401.1
Source Typegenomic
Repeat Motif(CTT)6
Primer 1JESPR0163_F: CTCCAGTTCACTCCAAATTATC
Primer 2JESPR0163_R: GGCACTACTACTGAGAAACAAG
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351401
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018207.1chromosomeCM018207.1:53566062..53566233 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:58012997..58013168 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:57127700..57127874 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:51635484..51635658 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:63252355..63252529 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:64299022..64299196 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:63431470..63431644 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:61291218..61291392 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3613supercontigscaffold3613:330476..330647 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:53579516..53579687 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:60460815..60460986 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:55963551..55963722 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:58498464..58498635 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:54800077..54800248 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:57959536..57959710 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:58395584..58395755 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:60746151..60746322 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351401.1AF351401.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch06_At.06N/A71.5JESP163View
2AD-genome wide Reference Map (2009)AD_ch06_At.06N/A168jespr0163View
3TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A61.81JESPR163-195View
4TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A76.1JESPR163-195View
5TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A65.68JESPR163-175View
6TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A64.1JESPR163-175View
Sequence
>JESPR0163 ID=JESPR0163; Name=JESPR0163; organism=Gossypium hirsutum; type=genetic_marker; length=175bp
CTCCAGTTCACTCCAAATTATCAATATTTGCACCCACAAACTCAAGTGCG
GTGATTATCTTCTCAATAGAATCTTCTTCTTCTTCTTCTTTCTCATTTTC
ACTAACTTCTTCTTCTTCTTCTTCTGCAACAACTTCCTCTTCTGCAGTAA
TAACTTGTTTCTCAGTAGTAGTGCC