JESPR0104, JESPR0104 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0104
AliasJESPR104
Genbank IDAF351343
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351343.1
Source Typegenomic
Repeat Motif(GA)10
Primer 1JESPR0104_F: GATGTTTAAGAATAACTATG
Primer 2JESPR0104_R: GGAAATTTTGATACACATCCAC
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351343
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:47421269..47421340 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:40734896..40734965 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:3171878..3171949 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_09chromosomeD10_09:3169848..3169929 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold251.1supercontigscaffold251.1:1430783..1430854 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold251.1supercontigscaffold251.1:1428633..1428732 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2283_A09supercontigscaffold2283_A09:39187..39262 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:47672833..47672904 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:49648079..49648150 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:78472570..78472635 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:48981672..48981743 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:49395330..49395401 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:47490135..47490206 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:50085678..50085749 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9120supercontigscaffold9120:254877..254948 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:48300758..48300829 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:74335749..74335814 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:50668297..50668368 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:48401611..48401680 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:49891498..49891569 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49071200..49071273 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:51236873..51236944 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:46955092..46955161 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:47706267..47706334 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:39574195..39574264 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:48824959..48825030 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:36774800..36774869 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:27871583..27871650 -Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:4334674..4334748 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:67554281..67554358 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeJESPR0104:1..251 .
Chr06:48083635..48083881 -		n/a
Chr6chromosomeJESPR0104:1..251 .
Chr6:45198499..45198745 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351343.1AF351343.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0104 ID=JESPR0104; Name=JESPR0104; organism=Gossypium hirsutum; type=genetic_marker; length=73bp
GATGTTTAAGAATAACTATGAAAAACCGAGAGAGAGAGAGAGAGAGAAAT
GGTGGATGTGTATCAAAATTTCC