JESPR0096, JESPR0096 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0096
AliasJESPR096
Genbank IDAF351335
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351335.1
Source Typegenomic
Repeat Motif(GT)5
Primer 1JESPR0096_F: CATCAGGTTCGAGATTGTCCCTCTG
Primer 2JESPR0096_R: CGTCCTGCTGCACACTCTACTCTC
PolymorphismP_ JESPR0096
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351335
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:86864378..86864562 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:87866039..87866223 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:39380576..39380760 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:37808654..37808838 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:67578325..67578509 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:95617429..95617613 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:94443763..94443947 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:91641742..91641926 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:89161239..89161423 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:72194522..72194706 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2361supercontigscaffold2361:86828..87012 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1740supercontigscaffold1740:619339..619523 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:85989727..85989911 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:89277654..89277838 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:91995928..91996112 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:88115967..88116151 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:96185003..96185187 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:100158289..100158470 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:92823371..92823555 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351335.1AF351335.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A168.9JESPR96View
Sequence
>JESPR0096 ID=JESPR0096; Name=JESPR0096; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
CATCAGGTTCGAGATTGTCCCTCTGTGATTTTGAGTCAGGTATGTTTAGA
TGCATTGATTTGAGTATAGGAATTGTGTATATAGTATGTGTATCTGCTTC
AGTGGTTAGGTGTTTTGGGTGTGTGTGTGAGGGTCCAAATTCAAGTTTGG
TATGGTAGTGTTTTGAGAGTAGAGTGTGCAGCAGGACG