JESPR0174, JESPR0174 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0174
AliasJESPR174
Genbank IDAF351412
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351412.1
Source Typegenomic
Repeat Motif(CTT)9
Primer 1JESPR0174_F: CAACAGGTTCCTACAGGTCTG
Primer 2JESPR0174_R: GATTGCTGAAATCACAGAGG
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351412
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:6427531..6427653 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:7416976..7417095 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:6075299..6075421 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:6984360..6984479 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:56386929..56387048 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:42501072..42501191 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:122269147..122269263 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:58081789..58081911 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:9264592..9264708 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:59726553..59726675 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:61962234..61962353 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:6028220..6028342 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:6659028..6659147 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:6576075..6576197 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:6948750..6948869 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:6205240..6205362 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:6976864..6976983 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:6387456..6387578 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:6475663..6475782 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:6467278..6467400 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:7293003..7293122 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:6321701..6321823 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At07chromosomeAt07:29870076..29870195 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4169supercontigscaffold4169:143843..143965 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16486supercontigscaffold16486:1915..2034 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11742supercontigscaffold11742:253789..253908 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:6177734..6177856 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:7072219..7072338 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:6243923..6244045 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:6950641..6950760 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:6164624..6164746 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:7032415..7032534 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:6378969..6379091 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:7372092..7372214 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:6290298..6290420 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:7095543..7095653 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:6413224..6413346 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:7327062..7327181 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:6695727..6695846 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:7099927..7100043 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:6010877..6010996 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:91528726..91528836 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:5977887..5978012 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:5808682..5808804 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:4885078..4885200 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:6210037..6210180 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:5331137..5331259 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:4389472..4389600 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:5500690..5500812 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:105703489..105703602 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:6252047..6252160 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:158148111..158148221 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351412.1AF351412.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0174 ID=JESPR0174; Name=JESPR0174; organism=Gossypium hirsutum; type=genetic_marker; length=120bp
CAACAGGTTCCTACAGGTCTGTTCTGAACAAATCATGTAGTTTTTTATTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCCATGTAACATAATATATGCAATT
CCTCTGTGATTTCAGCAATC