HAU0149, HAU0149 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0149
AliasHAU149
Genbank IDEU532259
TypeSSR
SpeciesGossypium barbadense
Source Typegenomic
Repeat Motif(TGC)4(TGT)4
Primer 1HAU0149_F: ATCCCGACTTCCATTATCAA
Primer 2HAU0149_R: AGCGTATGTTACAGCAGCAG
ContactZhang, Xian-Long
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEU532259
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:12112732..12112985 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:13049292..13049539 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:11317385..11317638 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:12767369..12767616 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:10753605..10753857 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:9818091..9818322 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:12729070..12729317 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:49672162..49672414 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:18402344..18402590 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:58013058..58013311 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:45192171..45192415 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold150301supercontigscaffold150301:41..294 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:11392129..11392382 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:11347825..11348072 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:11784442..11784695 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:12996917..12997164 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:11513971..11514224 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:12576449..12576696 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:11631931..11632184 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:13030993..13031237 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:11504109..11504362 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:13252564..13252811 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8954supercontigscaffold8954:7818..8065 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8954supercontigscaffold8954:5888..6141 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold26517supercontigscaffold26517:55239..55492 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:11701838..11702091 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:12366641..12366888 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:11697834..11698087 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:12932364..12932611 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:11661786..11662039 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:12781676..12781923 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:12029886..12030139 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:13046606..13046853 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:11575705..11575958 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:12661349..12661596 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:11865414..11865667 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:13266675..13266922 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:13560920..13561167 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:12568402..12568649 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:10808553..10808807 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:73362839..73363083 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:11228465..11228718 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:10156094..10156350 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:11511741..11512000 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:9992516..9992769 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:8470552..8470805 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:9854022..9854275 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:13947308..13947552 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:11132503..11132758 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:183614391..183614637 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A59.5HAU149View
Sequence
>HAU0149 ID=HAU0149; Name=HAU0149; organism=Gossypium barbadense; type=genetic_marker; length=248bp
ATCCCGACTTCCATTATCAATAGTATCAGCCAAATTCTCCACCAACTGTA
ACCCCACACAAACAAACACATAAAAAGAAGAAGGTAAAACATCAATTTTT
TTATAGTGTAAGACAAACTTTGTTAAGATTGTGGTTTAAAGGATTACATG
TAAGAGATGGAAGTGAGAAGCTAGTGATTGTTGTTGCTGATTCTGCTGCA
CTTGCTGCTGCTGCTGTTGTTGTTGTTGCTGCTGCTGTAACATACGCT