HAU0099, HAU0099 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0099
AliasHAU099
Genbank IDEE592962
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(GAAGG)4
Primer 1HAU0099_F: AAGGTGACGGTTTTATTTCC
Primer 2HAU0099_R: TCAACTGACCCTAAAACTTCC
Product Length200
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE592962
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:77889887..77890086 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:72892546..72892745 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:80611953..80612151 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:3760861..3761055 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold4316.1supercontigscaffold4316.1:49395..49594 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:71576391..71576590 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:77701751..77701950 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:78982272..78982471 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:79162617..79162816 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:75737400..75737599 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold32185supercontigscaffold32185:170310..170509 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:73596442..73596641 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:75029523..75029722 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:74951551..74951749 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:78165581..78165779 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:75117052..75117251 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:80968857..80969056 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:80082395..80082594 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:82815821..82816019 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:66445271..66445469 +Gossypium anomalum (B1) genome NSF_v1n/a
chr06chromosomechr06:39025387..39025580 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:32728352..32728546 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:48169165..48169356 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:36209395..36209700 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:33517577..33517771 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:5135494..5135690 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:66913719..66913935 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>HAU0099 ID=HAU0099; Name=HAU0099; organism=Gossypium barbadense; type=genetic_marker; length=200bp
AAGGTGACGGTTTTATTTCCATTTTCCATCACCCTTAACTGTTAAAAAGA
AAAAAAAAATGTGTCGACTAATGGTCTGTAACATAATGGTAATGAGTTAC
AAGAAAGAAAAAAAGAAAAGTCTAACAGATCATCTTGAGAAGGGAAGGGA
AGGGAAGGACGGTGTAGGTTTAGAGTTTAGGAAGTTTTAGGGTCAGTTGA