HAU0083, HAU0083 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0083
AliasHAU083
Genbank IDEE592913
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(TTTA)3
Primer 1HAU0083_F: TCTGTCTGTTCCCTAATCTGC
Primer 2HAU0083_R: TGTAGAAGCCCAAATTTTCC
Product Length148
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE592913
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:7787277..7787425 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:7772936..7773082 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:7248243..7248390 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018227.1chromosomeCM018227.1:7233924..7234069 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr13chromosomeDt_chr13:50410996..50411144 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:50396716..50396862 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:7367201..7367349 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:7353088..7353234 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:7376957..7377105 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:7362619..7362765 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:7202782..7202930 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:7188441..7188587 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:7599654..7599802 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:7585315..7585461 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:7258615..7258763 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D13chromosomeD13:7244274..7244420 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:7640191..7640338 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt13chromosomeDt13:7621735..7621880 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9864supercontigscaffold9864:215493..215640 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9864supercontigscaffold9864:197037..197182 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:7004330..7004477 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D13chromosomeGbar_D13:6990011..6990156 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:6965096..6965243 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D13chromosomeD13:6950576..6950721 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:7240126..7240273 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:7726381..7726529 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017661.1chromosomeCM017661.1:7712082..7712228 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D13chromosomeD13:7767468..7767616 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D13chromosomeD13:7753127..7753273 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:60931334..60931490 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:7704327..7704472 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:12783364..12783512 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:63060792..63060944 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:55795719..55795866 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Germplasm
Stock NameType
3-79accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A104.01HAU0083View
2AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A45HAU0083View
Sequence
>HAU0083 ID=HAU0083; Name=HAU0083; organism=Gossypium barbadense; type=genetic_marker; length=148bp
TCTGTCTGTTCCCTAATCTGCTGGGTTAGGGTTTTTTTTTAAAATTTGGG
CCTGTTGAGTAAAAAGGTCCACTATTTAGTGGACCTTTTTTATTTATTTA
CTTTATTTTGTTTATCTGTCTTGGGCCCGGAAAATTTGGGCTTCTACA