HAU0052, HAU0052 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0052
AliasHAU052
Genbank IDEE592641
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(TGA)4
Primer 1HAU0052_F: CGGCTATAACCTCAATCTCG
Primer 2HAU0052_R: TTGCTGAAAAACAACACACC
Product Length209
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE592641
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:50517402..50517706 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:47642936..47643240 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:40977683..40977986 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:2921114..2921418 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:4155297..4155598 -Gossypium australe (G2) genome CRI_v1.1n/a
D09chromosomeD09:47884925..47885229 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:49882113..49882417 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:49210413..49210717 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:49629628..49629932 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:47724476..47724780 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:50339017..50339321 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19352supercontigscaffold19352:61132..61436 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:48522430..48522734 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:50888970..50889274 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:48636287..48636591 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:50122559..50122863 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49296328..49296632 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:51471387..51471691 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:47200232..47200536 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:67499276..67499576 +Gossypium anomalum (B1) genome NSF_v1n/a
chr06chromosomechr06:39825079..39825549 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06_1711537chromosomeChr06_1711537:1437..1741 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:49048654..49048958 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:28039829..28040117 +Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:3877626..3877915 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:67809384..67809685 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:128859699..128859987 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>HAU0052 ID=HAU0052; Name=HAU0052; organism=Gossypium barbadense; type=genetic_marker; length=209bp
CGGCTATAACCTCAATCTCGCAGCCGGCCTACCTGCTAAATGTGGTCTCC
ATCTTCCTTACAACATCAGCCCCTCCACTGACTGCAACAAGGTGCAGTGA
GGTTGATGATGATGATATGGAAGAAGGAGTGGGAGAAGGTTTCAGCTCAG
CTAGATAAAGTAGCTAGCTAAGGTTAAATAAGCTGTGCTGGTGTGTTGTT
TTTCAGCAA