Gh695, Gh695 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh695
Genbank IDDQ908624
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908624
Source Typegenomic
Repeat MotifATG(6)
Primer 1Gh695_F: AAGAGATGGCAGCTTGACCTAGAC
Primer 2Gh695_R: CAAATCCAGTGCTCCGACAAATCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908624
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:246860..246945 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:260066..260154 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:233020..233105 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:291395..291483 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:65437943..65438028 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:195820..195905 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:124243008..124243096 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:312915..313000 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:376707..376792 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:42242764..42242849 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:248391..248476 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:295263..295351 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:291372..291457 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:264831..264919 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:290254..290339 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:230934..231022 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:280650..280735 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:133329..133417 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:280550..280635 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:270248..270336 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:313487..313572 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:304301..304389 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10433supercontigscaffold10433:86509..86594 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10193supercontigscaffold10193:93756..93844 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold2309supercontigScaffold2309:17012..17100 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold1558supercontigScaffold1558:65901..65986 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:205741..205826 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:247605..247690 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:282248..282336 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:238850..238935 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:290260..290348 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:272366..272451 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:269588..269676 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:265650..265735 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:254206..254294 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:246691..246776 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:269165..269253 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:315866..315954 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:277745..277833 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:62925333..62925418 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:332853..332937 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:288682..288767 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:194435..194520 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:182216..182301 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:334450..334532 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:190762..190847 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:161990..162075 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:206315..206400 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:255434..255519 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:211906..211991 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:186630354..186630439 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908624DQ908624Gossypium hirsutumsequence_feature


Sequence
>Gh695 ID=Gh695; Name=Gh695; organism=Gossypium hirsutum; type=genetic_marker; length=89bp
AAGAGATGGCAGCTTGACCTAGACATGATGATGATGATGATGTAGGTGTG
TGTCGGAAACAGGGAGGATTTGTCGGAGCACTGGATTTG