Gh694, Gh694 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh694
Genbank IDDQ908623
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908623
Source Typegenomic
Repeat MotifAGA(8)
Primer 1Gh694_F: CTTAGGTTAAAGATAACGGATTGCG
Primer 2Gh694_R: CCATTTCCAACTGTCAGCTACTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908623
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:12480412..12480487 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:12000789..12000861 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:9173314..9173392 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:11998988..11999063 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3326.1supercontigscaffold3326.1:11711..11786 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1233_A05supercontigscaffold1233_A05:13266..13341 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:11028782..11028848 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:12167076..12167151 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:11785405..11785480 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:12203877..12203952 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:12406741..12406816 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:9499105..9499177 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12729supercontigscaffold12729:149875..149947 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5454supercontigscaffold5454:277899..277965 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:10951218..10951284 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:11584076..11584148 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:12153574..12153646 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:12029668..12029743 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:12257242..12257317 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:11883394..11883466 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:12439572..12439647 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:12786082..12786154 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:11838212..11838287 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:9417953..9418025 +Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908623DQ908623Gossypium hirsutumsequence_feature


Sequence
>Gh694 ID=Gh694; Name=Gh694; organism=Gossypium hirsutum; type=genetic_marker; length=76bp
CTTAGGTTAAAGATAACGGATTGCGAAGAAGAAGAAGAAGAAGAAGAAGA
AAACAGTAGCTGACAGTTGGAAATGG