Gh693, Gh693 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh693
Genbank IDDQ908622
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908622
Source Typegenomic
Repeat MotifCTTTT(3)
Primer 1Gh693_F: GCATACTTCTCCTATCGTTTTCCC
Primer 2Gh693_R: AAGAAAAAGGGTTTGCTAGGCAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908622
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:10407337..10407419 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:11578034..11578115 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:9261492..9261575 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:10975319..10975400 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:12338905..12338986 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:34548433..34548515 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:38930190..38930272 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:13689329..13689410 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:10277472..10277554 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:11288963..11289044 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:10261638..10261720 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:11449654..11449735 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:9898314..9898396 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:10976018..10976099 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:9890618..9890700 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:11385747..11385828 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:9888684..9888766 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:11559919..11560000 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:11002509..11002592 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10075supercontigscaffold10075:396557..396640 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold535supercontigscaffold535:32279..32360 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:10483720..10483803 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:11044966..11045047 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:11656019..11656102 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:11042334..11042415 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:11108375..11108456 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:9181552..9181634 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:11234129..11234210 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:9710957..9711040 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:11094593..11094674 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:10366839..10366921 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:11596595..11596676 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:11512740..11512821 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:13076260..13076341 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:9769571..9769653 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:11350754..11350836 +Gossypium anomalum (B1) genome NSF_v1n/a
chr06chromosomechr06:8445186..8445268 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:9303423..9303505 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908622DQ908622Gossypium hirsutumsequence_feature


Sequence
>Gh693 ID=Gh693; Name=Gh693; organism=Gossypium hirsutum; type=genetic_marker; length=82bp
GCATACTTCTCCTATCGTTTTCCCCTTTCGCTACTCTTTTCTTTTCTTTT
CCATTTTTCCTGCCTAGCAAACCCTTTTTCTT