Gh688, Gh688 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh688
Genbank ID	DQ908617
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908617
Source Type	genomic
Repeat Motif	TCT(6)
Primer 1	Gh688_F: GACTTCAGCTTATTGCATTGGTTCG
Primer 2	Gh688_R: CAATTTTGGGTTGTCACAAAGGATCC
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908617

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_418	supercontig	scaffold_418:17809..17892 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018211.1	chromosome	CM018211.1:30099003..30099086 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
A10	chromosome	A10:27707029..27707112 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Scaffold3200	supercontig	Scaffold3200:14297..14380 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A10	chromosome	A10:30709990..30710073 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A10	chromosome	A10:30273857..30273940 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A10	chromosome	A10:30027588..30027671 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A10	chromosome	Gbar_A10:30433407..30433490 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A10	chromosome	A10:30443943..30444026 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017619.1	chromosome	CM017619.1:30748238..30748321 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017645.1	chromosome	CM017645.1:31709050..31709133 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017697.1	chromosome	CM017697.1:30805854..30805937 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A10	chromosome	A10:31721323..31721406 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908617	DQ908617	Gossypium hirsutum	sequence_feature

Sequence

>Gh688 ID=Gh688; Name=Gh688; organism=Gossypium hirsutum; type=genetic_marker; length=84bp
GACTTCAGCTTATTGCATTGGTTCGATCTCTGTGGGATCTTCTTCTTCTT
CTTCTTTAGGATCCTTTGTGACAACCCAAAATTG

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Gh688, Gh688 (genetic_marker) Gossypium hirsutum