Gh685, Gh685 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh685
Genbank IDDQ908614
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908614
Source Typegenomic
Repeat MotifAGA(9)
Primer 1Gh685_F: GTAACAGAACGCAATTGATGAAAGC
Primer 2Gh685_R: CCCATGGCAATATTGGTATTTTATACG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908614
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:16286920..16287040 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:15285430..15285550 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:14396670..14396780 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:45963522..45963624 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:54547993..54548113 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:15365617..15365737 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:15839870..15839990 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:17260774..17260881 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:15454696..15454816 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:15661696..15661816 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:15555771..15555891 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1293supercontigscaffold1293:211430..211550 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1293supercontigscaffold1293:208705..208825 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold24076supercontigscaffold24076:33639..33759 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold24076supercontigscaffold24076:20454..20564 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold1489supercontigScaffold1489:8581..8701 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:15706572..15706689 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:15673432..15673552 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:15562818..15562938 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:16031273..16031393 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:15679009..15679129 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:16033929..16034049 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:16042551..16042669 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:14456751..14456862 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:15098314..15098434 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:13427769..13427880 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:15490916..15491036 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:12920694..12920802 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:11149790..11149901 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:12973600..12973711 -Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:14708880..14709003 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908614DQ908614Gossypium hirsutumsequence_feature


Sequence
>Gh685 ID=Gh685; Name=Gh685; organism=Gossypium hirsutum; type=genetic_marker; length=119bp
GTAACAGAACGCAATTGATGAAAGCTTTTCCACACACAAAATGGAAGAAG
AAGAAGAACAAGAAGAAGAAGAAGAAAGTCAAAATGAAGAAACGTATAAA
ATACCAATATTGCCATGGG