Gh677, Gh677 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh677
Genbank IDDQ908607
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908607
Source Typegenomic
Repeat MotifAG(16)
Primer 1Gh677_F: AGGAAGATTGAGAGCGAGAGCC
Primer 2Gh677_R: GTGGGTGGCATTGAAGGTTACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908607
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:97329321..97329436 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:94180351..94180466 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_12chromosomeKI_12:4112328..4112453 +Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:5463063..5463172 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:49741716..49741821 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr5chromosomeAt_chr5:8499342..8499457 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:82690088..82690203 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:57164751..57164846 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:101960929..101961044 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:102198148..102198263 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:100117092..100117207 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:97032313..97032428 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At12chromosomeAt12:88686873..88686988 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5858supercontigscaffold5858:190613..190708 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9303supercontigscaffold9303:19161..19276 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:53726918..53727013 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:96994052..96994167 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:96209831..96209946 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:97429063..97429178 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:101155641..101155756 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:96599342..96599457 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:103699730..103699845 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:104653484..104653599 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:111794158..111794267 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:82834754..82834857 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:53107164..53107265 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:41193092..41193191 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr08chromosomeChr08:38292557..38292704 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:29870251..29870350 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:36647961..36648060 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:108265055..108265158 -Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908607DQ908607Gossypium hirsutumsequence_feature


Sequence
>Gh677 ID=Gh677; Name=Gh677; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
AGGAAGATTGAGAGCGAGAGCCATTGACAGAGATGTAATATTACAATTAC
AAAGAGAAAGAGAGAGAGAGACAGAGAGAGAGAAAGAGAGAGACGGTAAC
CTTCAATGCCACCCAC