Gh625, Gh625 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh625
Genbank IDDQ908559
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908559
Source Typegenomic
Repeat MotifTC(13)
Primer 1Gh625_F: ATCAGAGGCGAAAACAATACATATACC
Primer 2Gh625_R: TATTTCTACTGTAGCGTGTGTATATGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908559
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:72393865..72394008 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:80188705..80188845 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:103992657..103992810 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:22590923..22591068 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:66256879..66257024 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:85912854..85912999 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:85279097..85279242 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:82942520..82942665 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:78752500..78752645 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold815supercontigscaffold815:218709..218849 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:79613247..79613387 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:81706877..81707017 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:81280637..81280775 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:87767172..87767324 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:81533910..81534053 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:86432925..86433070 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:31588799..31588948 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:30755809..30755961 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:31639857..31640075 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908559DQ908559Gossypium hirsutumsequence_feature


Sequence
>Gh625 ID=Gh625; Name=Gh625; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
ATCAGAGGCGAAAACAATACATATACCCCATTCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTGTTTTCAAAATTTTTATCATTCTTTTTCAGTTTTGGTTT
AACTAGAGGCAAAAAAAACCCATATACACACGCTACAGTAGAAATA