Gh618, Gh618 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh618
Genbank IDDQ908552
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908552
Source Typegenomic
Repeat MotifTCT(7)
Primer 1Gh618_F: CTCTAAAATACAATCAACCCTTCTCTTC
Primer 2Gh618_R: CTACAAAATCCAAAGGTTGTGGAATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908552
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:49696577..49696666 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_12chromosomeD10_12:44643098..44643181 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:46053302..46053388 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:49218486..49218572 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:52072193..52072279 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:51027500..51027586 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:52191868..52191954 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:49972946..49973032 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold18884supercontigscaffold18884:48399..48488 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:49001649..49001738 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:90324915..90324984 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:50172975..50173064 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:50045665..50045751 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:53474180..53474272 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:50699859..50699948 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:52148548..52148634 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:47964748..47964828 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:34819768..34819848 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:49342313..49342393 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeGh618:2..373 .
Chr08:47258916..47259281 -		n/a
scaffold353supercontigGh618:2..373 .
scaffold353:506752..507117 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908552DQ908552Gossypium hirsutumsequence_feature


Sequence
>Gh618 ID=Gh618; Name=Gh618; organism=Gossypium hirsutum; type=genetic_marker; length=87bp
CTCTAAAATACAATCAACCCTTCTCTTCTTTTTCTTCTTCTTCTTCTTCT
TCTTTTCTTTAGATTCCACAACCTTTGGATTTTGTAG