Gh614, Gh614 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh614
Genbank IDDQ908548
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908548
Source Typegenomic
Repeat MotifCA(8)
Primer 1Gh614_F: GTAGCTTTATTGGTTCAATTTTTCCTAG
Primer 2Gh614_R: GGAATTTTATAAGATCCACAAGAAACTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908548
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:582356..582471 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:163294..163409 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:120056..120176 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:176077..176191 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:114379..114501 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:161662..161776 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:58726208..58726328 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:145827130..145827245 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3123.1supercontigscaffold3123.1:145870..145985 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2046.1supercontigscaffold2046.1:161703..161818 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:213611..213726 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4085_D06supercontigscaffold4085_D06:85013..85187 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:32128..32243 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:158309..158424 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:56432..56547 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:150559..150674 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:12295..12410 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:150148..150263 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:158316..158431 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:159364..159479 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:205065..205179 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7493supercontigscaffold7493:205065..205179 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17324supercontigscaffold17324:148647..148767 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:69115..69234 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:40594..40708 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:132388..132508 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:175491..175605 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:165741..165855 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:163049..163166 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:140231..140347 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:158814..158929 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:151407..151527 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:173388..173501 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:21010..21125 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:159896..160011 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:193173..193290 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:200606..200720 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:114527..114650 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:136970..137089 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:94207..94318 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:99244..99440 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:123597..123706 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:88688..88872 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:91541..91642 +Gossypium gossypioides (D6) genome ISU_v1n/a
E06chromosomeE06:118319927..118320052 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:203220981..203221090 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr10chromosomeGh614:1..521 .
Chr10:114315..114829 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908548DQ908548Gossypium hirsutumsequence_feature


Sequence
>Gh614 ID=Gh614; Name=Gh614; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
GTAGCTTTATTGGTTCAATTTTTCCTAGTTTAATGCTATAATTCACTCAC
ACACACACACACACCAAAAAAAAAAAGTTTACTAGTTTCAGTTTCTTGTG
GATCTTATAAAATTCC