Gh609, Gh609 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh609
Genbank IDDQ908543
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908543
Source Typegenomic
Repeat MotifTA(5)
Primer 1Gh609_F: CAAGATGGAGTTGAATCCTCCTC
Primer 2Gh609_R: GGATGAATGGTTGTGATGAGGTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908543
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:24584551..24584644 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:38720501..38720594 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:22928978..22929071 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:30262745..30262838 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:40532079..40532172 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:70044903..70044996 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr3chromosomeAt_chr3:42449363..42449456 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:24438422..24438515 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:24912677..24912770 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:24278385..24278478 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:24944669..24944762 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:24367817..24367910 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:27946267..27946360 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6949supercontigscaffold6949:145514..145626 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12416supercontigscaffold12416:128067..128160 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:24806455..24806548 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:24657895..24657988 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:24931796..24931889 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:25181359..25181452 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:24973318..24973411 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:25220079..25220172 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:29319895..29319988 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:24202651..24202744 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:25808027..25808120 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:24845081..24845174 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:21299863..21299956 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01_5125165chromosomeChr01_5125165:10696..10789 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_05chromosomeChr_05:17512979..17513072 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:24239000..24239093 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:19838176..19838269 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:36703207..36703300 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:16189200..16189293 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:19494727..19494820 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:54115411..54115503 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr04chromosomeChr04:74060707..74060800 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeGh609:1..466 .
Chr01:24669072..24669537 -		n/a
Chr1chromosomeGh609:1..466 .
Chr1:14015071..14015524 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908543DQ908543Gossypium hirsutumsequence_feature


Sequence
>Gh609 ID=Gh609; Name=Gh609; organism=Gossypium hirsutum; type=genetic_marker; length=94bp
CAAGATGGAGTTGAATCCTCCTCGATAAGTCATTCCCCAACTATATATAT
AGCCCCTTATGCACGGCCTCCCACCTCATCACAACCATTCATCC