Gh607, Gh607 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh607
Genbank IDDQ908542
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908542
Source Typegenomic
Repeat MotifCGT(4)
Primer 1Gh607_F: CTTTTTCTTGTGTCATCTCCACTGC
Primer 2Gh607_R: ATACCGAAGAGTGGCAATTCATATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908542
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:54755000..54755062 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:50627488..50627550 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr8chromosomeAt_chr8:77652937..77652999 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold30299supercontigscaffold30299:903..965 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:50502888..50502950 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:53671834..53671896 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:54754922..54754984 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:53837870..53837932 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Dt13chromosomeDt13:52710664..52710726 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt13chromosomeDt13:52699983..52700044 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13076supercontigscaffold13076:168663..168725 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:50341109..50341171 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:51659712..51659774 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:51351418..51351480 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:54570548..54570610 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:51265830..51265892 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:54880283..54880345 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:27024565..27024627 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:33857998..33858060 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908542DQ908542Gossypium hirsutumsequence_feature


Sequence
>Gh607 ID=Gh607; Name=Gh607; organism=Gossypium hirsutum; type=genetic_marker; length=63bp
CTTTTTCTTGTGTCATCTCCACTGCCGTCGTCGTCGTTGATATGAATTGC
CACTCTTCGGTAT