Gh606, Gh606 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh606
Genbank IDDQ908541
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908541
Source Typegenomic
Repeat MotifTCT(5)
Primer 1Gh606_F: CAATAGCACATCGAAATCGCAGTG
Primer 2Gh606_R: CCCATTTTAGAAGAACTTTACCTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908541
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:90422229..90422345 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:54471410..54471528 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:88989078..88989197 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:116291482..116291596 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:52384025..52384141 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:82945413..82945529 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:95179022..95179138 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:94368569..94368685 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:92271314..92271430 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:87552686..87552802 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:85467418..85467537 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9288supercontigscaffold9288:50910..51029 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:88083969..88084088 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:90410805..90410924 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:90327154..90327270 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:96554541..96554657 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:90464171..90464290 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:95754299..95754415 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:18274861..18274977 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:18458116..18458231 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:16800176..16800291 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908541DQ908541Gossypium hirsutumsequence_feature


Sequence
>Gh606 ID=Gh606; Name=Gh606; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
CAATAGCACATCGAAATCGCAGTGGGTATCTTCATTTCTTGTCTTCTTCT
TCTTCTTTTTTCTTTTTCTTCTCTTCTTCTTCACCTACTGCCCCAGGTAA
AGTTCTTCTAAAATGGG