Gh601, Gh601 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh601
Genbank IDDQ908536
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908536
Source Typegenomic
Repeat MotifAG(11)
Primer 1Gh601_F: GTTTAGTGCATCTGATATTGTTACACC
Primer 2Gh601_R: ACAAGACTCCAAAAGCTTGCAAGTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908536
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:27861889..27861981 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:26962100..26962194 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:39148409..39148503 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:27841828..27841920 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:61687232..61687324 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:26792736..26792828 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:27423515..27423607 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:39151451..39151543 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:26789389..26789481 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:27456765..27456857 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:26896773..26896873 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9278supercontigscaffold9278:324475..324569 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold234supercontigscaffold234:299709..299801 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:27150223..27150317 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:38015992..38016084 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:27243169..27243263 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:27458604..27458696 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:27621697..27621791 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:27463568..27463662 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:27743972..27744064 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:41129231..41129325 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:26922065..26922157 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:27353705..27353797 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:23218369..23218461 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:20937285..20937377 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:26624345..26624439 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:21518271..21518363 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:17658004..17658098 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:21240821..21240911 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:34793572..34793671 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:73121976..73122087 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeGh601:1..625 .
Chr01:27079923..27080538 +		n/a
Chr1chromosomeGh601:1..625 .
Chr1:11536975..11537590 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908536DQ908536Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A88.8Gh601View
Sequence
>Gh601 ID=Gh601; Name=Gh601; organism=Gossypium hirsutum; type=genetic_marker; length=99bp
GTTTAGTGCATCTGATATTGTTACACCAATTTGTATTGTCACACTAACTA
GAGAGAGAGAGAGAGAGAGAGTAGGACTTGCAAGCTTTTGGAGTCTTGT