Gh575, Gh575 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh575
Genbank IDDQ908511
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908511
Source Typegenomic
Repeat MotifA(10)
Primer 1Gh575_F: TTGCTGTTAGCATGTGATAGGACG
Primer 2Gh575_R: GAGTTTGTTCCACATCATAGGTAATAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908511
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:41353774..41353858 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:69007712..69007791 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:39193509..39193593 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:64519787..64519866 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:32949736..32949821 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:71647973..71648052 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016622.1chromosomeCM016622.1:16803929..16804016 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:10373481..10373565 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:52160107..52160186 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:39238126..39238210 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:64066465..64066544 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:41194631..41194715 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:68779086..68779165 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:40870646..40870730 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:70530856..70530935 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:40952150..40952233 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:70510956..70511035 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:39023358..39023442 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:67430308..67430387 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:66544513..66544592 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7230supercontigscaffold7230:33297..33376 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7230supercontigscaffold7230:36000..36084 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3330supercontigscaffold3330:100063..100142 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:39882958..39883042 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:64932196..64932275 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:42330175..42330259 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:66426920..66426999 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:40090852..40090936 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:66364563..66364641 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:41494533..41494618 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:69317762..69317841 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:40665505..40665589 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:66380974..66381053 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:42658059..42658143 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:71885742..71885821 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:70862010..70862089 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:74099470..74099549 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:39184373..39184458 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:58144035..58144117 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:39600057..39600141 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:41018631..41018714 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:27657208..27657378 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:14718410..14718495 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:59302709..59302791 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:115208944..115209035 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908511DQ908511Gossypium hirsutumsequence_feature


Sequence
>Gh575 ID=Gh575; Name=Gh575; organism=Gossypium hirsutum; type=genetic_marker; length=80bp
TTGCTGTTAGCATGTGATAGGACGGCTATATATAAGTAGAAAAAAAAAAT
CTTCTATTACCTATGATGTGGAACAAACTC