Gh572, Gh572 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh572
Genbank IDDQ908509
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908509
Source Typegenomic
Repeat MotifTCT(8)
Primer 1Gh572_F: CTCAGCTCCATTACAAACCATCTAC
Primer 2Gh572_R: GGACCTTATAATGGTCCCAAAGTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908509
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:16235246..16235419 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:15458474..15458646 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:112593674..112593841 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A10chromosomeA10:15250357..15250530 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:15665651..15665824 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:15389778..15389951 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:15267512..15267685 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:16128368..16128541 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2159supercontigscaffold2159:347137..347309 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13437supercontigscaffold13437:2208..2380 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:15729262..15729434 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:15541839..15542011 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:15600923..15601078 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:16150603..16150771 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:15810180..15810349 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:16219214..16219387 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:16337036..16337209 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:16781811..16781980 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:83279405..83279563 -Gossypium anomalum (B1) genome NSF_v1n/a
chr11chromosomechr11:12393268..12393501 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:10348794..10349053 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908509DQ908509Gossypium hirsutumsequence_feature


Sequence
>Gh572 ID=Gh572; Name=Gh572; organism=Gossypium hirsutum; type=genetic_marker; length=173bp
CTCAGCTCCATTACAAACCATCTACTTTTTTTCCTTCTTCTCTTCTCTAT
TCTGCTACTCTTTCTTCCCTCATTCTCTTTTTCTTTTCCCCCTTCGTTCT
CTTCTTCTTCTGGTCTATTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTC
ACTTTGGGACCATTATAAGGTCC