Gh571, Gh571 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh571
Genbank IDDQ908508
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908508
Source Typegenomic
Repeat MotifTCT(8)
Primer 1Gh571_F: CACTGCTCAATGATTTCATATCTACC
Primer 2Gh571_R: AGGGGAAAGTTGAAGAATTTTTAGGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908508
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:2547013..2547109 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:1927425..1927533 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:2296185..2296323 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:12309792..12309888 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:2156611..2156707 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:2198117..2198213 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:2312606..2312702 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:2226536..2226632 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold59supercontigscaffold59:84650..84740 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold59supercontigscaffold59:83541..83631 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1509supercontigscaffold1509:184878..184986 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1509supercontigscaffold1509:183550..183658 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:1709340..1709448 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:2240470..2240560 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:1723521..1723629 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017648.1chromosomeCM017648.1:2255296..2255392 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A13chromosomeA13:2442379..2442475 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:2245461..2245599 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr13chromosomechr13:1756839..1756938 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr13chromosomechr13:1757145..1757416 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908508DQ908508Gossypium hirsutumsequence_feature


Sequence
>Gh571 ID=Gh571; Name=Gh571; organism=Gossypium hirsutum; type=genetic_marker; length=100bp
CACTGCTCAATGATTTCATATCTACCTCTTCTTCTTCTTCTTCCTTCTTC
TTCTAATTTTACATTACAACATTAGCCTAAAAATTCTTCAACTTTCCCCT