Gh569, Gh569 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh569
Genbank IDDQ908506
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908506
Source Typegenomic
Repeat MotifTC(17
Primer 1Gh569_F: TTTCTCCGCGAGGCAATTCAAAAC
Primer 2Gh569_R: ATCCAAGAACCCTAATGAATTTTCTGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908506
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:59226825..59226945 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:56522161..56522283 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:8397826..8397967 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:8752339..8752455 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:47552957..47553077 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_D10chromosomeGhir_D10:58992683..58992803 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:105961663..105961762 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:58758316..58758436 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:57551117..57551236 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:55373576..55373696 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7531supercontigscaffold7531:124152..124252 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7531supercontigscaffold7531:120486..120586 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13257supercontigscaffold13257:25793..25915 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:56500639..56500759 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:100842372..100842472 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:57426863..57426985 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:56547432..56547562 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:58686912..58687040 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:57909978..57910102 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:59092735..59092855 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:53919670..53919801 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:55861728..55861836 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:46011852..46011968 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:57010482..57010584 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:30952648..30952869 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr5chromosomeGh569:1..567 .
Chr5:40375268..40375839 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908506DQ908506Gossypium hirsutumsequence_feature


Sequence
>Gh569 ID=Gh569; Name=Gh569; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
TTTCTCCGCGAGGCAATTCAAAACCCCCGTGAGCGCCTTTCCAGTAAGTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTGTTTGCAGAAAATT
CATTAGGGTTCTTGGAT