Gh554, Gh554 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh554
Genbank IDDQ908492
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908492
Source Typegenomic
Repeat MotifAAAAAGAAAAAGAAG(2)
Primer 1Gh554_F: GAGTGGAACTGAATGAGGATTCTG
Primer 2Gh554_R: TTCAACTGGCTGCATTGGTTCGAT
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908492
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:38338058..38338203 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:36637665..36637807 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:32761634..32761788 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr4chromosomeDt_chr4:15101424..15101569 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:35779877..35780022 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:38687211..38687356 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:39777323..39777468 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:38432389..38432534 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:36449963..36450108 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:35453826..35453968 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5589supercontigscaffold5589:120425..120567 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:36566452..36566594 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:38242372..38242514 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:37592336..37592477 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:39179067..39179200 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:36763505..36763647 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:38969004..38969149 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:33395037..33395187 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeGh554:1..692 .
Chr04:33225659..33226352 -		n/a
Chr4chromosomeGh554:1..692 .
Chr4:9183939..9184640 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908492DQ908492Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A59.9Gh554View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A27.5Gh554View
Sequence
>Gh554 ID=Gh554; Name=Gh554; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
GAGTGGAACTGAATGAGGATTCTGAAGAAGAATAAAAAGAAAAAGAAGAA
AAAGAAAAAGAAGAAGAAGAATAAGAAGAAGAAAAAGAAGAAGAAGAAGA
AGAAGAAGACGATCCCACAGAGATCGAACCAATGCAGCCAGTTGAA