Gh553, Gh553 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh553
Genbank IDDQ908491
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908491
Source Typegenomic
Repeat MotifCT(6)
Primer 1Gh553_F: CTCTCTTTGTGTTATTTGTAACTAAGGG
Primer 2Gh553_R: TGAGCTGAAAGAGGAGAATCACTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908491
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:58314260..58314447 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:55648829..55649016 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:12953791..12953982 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:54647554..54647976 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold125.1supercontigscaffold125.1:952897..953084 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:53397101..53397288 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:58203857..58204044 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:57593757..57593944 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:58153718..58153905 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:55470909..55471096 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9501supercontigscaffold9501:147264..147451 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9501supercontigscaffold9501:144783..145258 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:55392534..55392721 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:58250693..58250891 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:57554478..57554664 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:58998167..58998353 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D11chromosomeD11:58010530..58010717 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:11255878..11256069 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:83631393..83631829 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:55325418..55325839 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:36949903..36950325 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:55912067..55912485 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:33441555..33441825 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:29514174..29514590 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:35725764..35726022 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:94929925..94930358 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908491DQ908491Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A162.5GH553View
Sequence
>Gh553 ID=Gh553; Name=Gh553; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
CTCTCTTTGTGTTATTTGTAACTAAGGGAAAAACAAAACAATAATATTAA
TAGTGAGATGCAAGAAAGAAAGTGAAGAAACATAGAAAATAGCAAAAGGG
TATCTCTCTATTTGTCTCTCTTTCTCTCTCTCTCTACCTCTTTCTTTACA
AATTTTTTTTTTTGGAGTGATTCTCCTCTTTCAGCTCA