Gh550, Gh550 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh550
Genbank IDDQ908489
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908489
Source Typegenomic
Repeat MotifAG(4)
Primer 1Gh550_F: ATTGGAGAACCTTACTGCACTGAC
Primer 2Gh550_R: CTCCCACTTATTTCATATTACCCAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908489
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:74973421..74973510 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:74589692..74589781 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:93559583..93559672 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:21139905..21139995 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:21291528..21291617 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:66951940..66952029 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:78655663..78655752 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:80217895..80217984 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:78712525..78712614 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:74194884..74194973 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold16276supercontigscaffold16276:152765..152854 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:74897433..74897522 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:76489113..76489202 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:75616188..75616277 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:20925036..20925126 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:82306791..82306880 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:77669473..77669568 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:81646439..81646528 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:44321369..44321458 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:34636876..34636965 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:71383097..71383186 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:105093719..105093809 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908489DQ908489Gossypium hirsutumsequence_feature


Sequence
>Gh550 ID=Gh550; Name=Gh550; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
ATTGGAGAACCTTACTGCACTGACGTGACACAACAAAAGAGAGAGTGTGT
GTATGGGAGAGAGAAGTGGGTAATATGAAATAAGTGGGAG