Gh549, Gh549 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh549
Genbank IDDQ908488
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908488
Source Typegenomic
Repeat MotifTCT(4)
Primer 1Gh549_F: TGCTATGACAATGTTTACATCAGAGTC
Primer 2Gh549_R: AGAAGGAAGCTGCTACTACAGAAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908488
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:17997242..17997348 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:16730924..16731030 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:45568689..45568792 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:47620407..47620517 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:14377598..14377704 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:16757144..16757250 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:17187602..17187708 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:16751687..16751793 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17343800..17343906 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:17297489..17297595 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8133supercontigscaffold8133:147123..147229 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:16554304..16554410 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:17081978..17082084 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:16942053..16942144 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:17228941..17229053 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:17095951..17096057 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:17435300..17435406 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:16572550..16572654 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:16820913..16821024 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:17025511..17025616 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908488DQ908488Gossypium hirsutumsequence_feature


Sequence
>Gh549 ID=Gh549; Name=Gh549; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
TGCTATGACAATGTTTACATCAGAGTCTTCCTCTTTTTTTTCTTCTTCTT
CTTCAATAACTTCTTCTTCAACAACGGTTTTTGCTTCTGTAGTAGCAGCT
TCCTTCT