Gh546, Gh546 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh546
Genbank IDDQ908485
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908485
Source Typegenomic
Repeat MotifTA(4)
Primer 1Gh546_F: AATGGAGCTTGAAGCAATCACAGC
Primer 2Gh546_R: CTTGGTCAAGGCTGTTTGTTCAAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908485
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:4269681..4269764 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:4351491..4351574 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:108791567..108791650 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:2946668..2946751 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:3335079..3335162 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:5122079..5122162 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:4744981..4745064 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:5062773..5062856 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:4469258..4469341 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold27528supercontigscaffold27528:19020..19103 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:4377277..4377360 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:4458300..4458383 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:4693553..4693636 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:5041412..5041495 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:4638665..4638748 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:5149104..5149187 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:4149872..4149955 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:114032253..114032336 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:4911659..4911744 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:45820992..45821076 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:28621111..28621195 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908485DQ908485Gossypium hirsutumsequence_feature


Sequence
>Gh546 ID=Gh546; Name=Gh546; organism=Gossypium hirsutum; type=genetic_marker; length=84bp
AATGGAGCTTGAAGCAATCACAGCTATATATATGCTGTGCACAACACCCA
AATAAAATAAGTTGAACAAACAGCCTTGACCAAG