Gh543, Gh543 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh543
Genbank IDDQ908482
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908482
Source Typegenomic
Repeat MotifACA(4)
Primer 1Gh543_F: ACGAAATCAGTCCAGTTTCGGATTC
Primer 2Gh543_R: TCCACTTTAGTAATCAGAAAGGGAAAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908482
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:43186145..43186227 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:71431896..71431978 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:40978669..40978751 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:66922370..66922449 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:34668713..34668795 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:31320560..31320639 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:74074211..74074290 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:8911393..8911475 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:13698113..13698192 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:8506851..8506933 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:315445..315527 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:40863082..40863164 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:66347896..66347978 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold180012supercontigscaffold180012:116..198 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:43016887..43016969 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:71194448..71194530 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:42575270..42575352 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:72835804..72835886 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:42763234..42763316 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:72948100..72948182 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:40848476..40848558 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:69572790..69572872 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:43509726..43509808 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8809supercontigscaffold8809:112472..112554 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10595supercontigscaffold10595:170440..170519 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:41661548..41661630 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:67355680..67355759 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:44128695..44128777 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:68860635..68860714 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:41912535..41912617 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:68818896..68818975 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:43271536..43271618 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:71648223..71648302 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:42477023..42477105 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:68863962..68864041 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:44466557..44466639 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:74337620..74337702 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:73456323..73456402 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:76335722..76335801 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:40891327..40891409 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:60327836..60327915 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:41407456..41407538 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:28488326..28488408 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:42726436..42726518 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:31460720..31460802 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:23630953..23631035 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:29001052..29001134 +Gossypium lobatum (D7) genome ISU_v1n/a
F09chromosomeF09:61263354..61263433 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:118935603..118935682 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908482DQ908482Gossypium hirsutumsequence_feature


Sequence
>Gh543 ID=Gh543; Name=Gh543; organism=Gossypium hirsutum; type=genetic_marker; length=83bp
ACGAAATCAGTCCAGTTTCGGATTCACAACAACAACAACTAACTATTAAG
ATTTCACTTTCCCTTTCTGATTACTAAAGTGGA