Gh541, Gh541 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh541
Genbank IDDQ908480
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908480
Source Typegenomic
Repeat MotifGA(15)
Primer 1Gh541_F: CTAAGTAAATAGAGAATATCAACAAGGG
Primer 2Gh541_R: CTTGTTCTATAAAGAAGTCATACTTTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908480
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:63033421..63033600 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:98782516..98782705 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:59364958..59365137 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:96847978..96848185 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr5chromosomeDt_chr5:18193410..18193589 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:46819034..46819223 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:60221569..60221748 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:91603176..91603365 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:61969679..61969858 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:103484501..103484689 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:62276465..62276644 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:102483950..102484139 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:63378276..63378455 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:100560938..100561127 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:60420893..60421072 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:95808261..95808450 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:93152561..93152766 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:93151339..93151518 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10720supercontigscaffold10720:30908..31087 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5741supercontigscaffold5741:199747..199952 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5741supercontigscaffold5741:198525..198704 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:59939640..59939819 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:96019409..96019614 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:61211851..61212030 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:98297862..98298069 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:62266655..62266834 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:97649582..97649773 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:63857544..63857723 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:104797307..104797501 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:60850331..60850510 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:98647745..98647958 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:64340545..64340724 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:104104342..104104531 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:9481554..9481755 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:55597201..55597397 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:9330036..9330239 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:32683530..32683709 -Gossypium gossypioides (D6) genome ISU_v1n/a
F03chromosomeF03:101978446..101978629 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908480DQ908480Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A80.4GH541View
Sequence
>Gh541 ID=Gh541; Name=Gh541; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
CTAAGTAAATAGAGAATATCAACAAGGGGGGAACAAGAACAAGAACAAGA
AAAGAGAAAAAGAAAGAAATGCGGATATAAAAGAAAAGTTGTAATTGTTG
TGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGANGAGAGAGGTG
GGCATTTGAGAGGGGAAAGTATGACTTCTTTATAGAACAAG