Gh531, Gh531 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh531
Genbank IDDQ908470
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908470
Source Typegenomic
Repeat MotifTCT(15)
Primer 1Gh531_F: AACTGGAATCACTCCAAGCATCTC
Primer 2Gh531_R: ATTGGATGTTTGCAAACCCTTAATACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908470
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:119531460..119531631 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:15526882..15527052 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1851.1supercontigscaffold1851.1:223479..224412 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:101677484..101677655 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:122113476..122113644 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:110539068..110539175 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:124608478..124608649 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:124191699..124191864 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:119987346..119987519 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold32144supercontigscaffold32144:49475..49574 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17187supercontigscaffold17187:153531..153639 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:113337915..113338023 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017615.1chromosomeCM017615.1:119701869..119702001 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:124897964..124898162 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:117599558..117599735 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:126273969..126274140 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:113578381..113578548 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908470DQ908470Gossypium hirsutumsequence_feature


Sequence
>Gh531 ID=Gh531; Name=Gh531; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
AACTGGAATCACTCCAAGCATCTCTATTTTTTCTCTTCTCCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTT
CTTCTTCTTCTTCTCTCTGGTATTAAGGGTTTGCAAACATCCAAT