Gh522, Gh522 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh522
Genbank ID	DQ908461
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908461
Source Type	genomic
Repeat Motif	AG(12)
Primer 1	Gh522_F: GATGGCTTGTTGGGTTAAGTAGTG
Primer 2	Gh522_R: TAGTTCCTAATGGAACAAAATGAGTGC
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908461

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A13	chromosome	A13:2320129..2320206 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018214.1	chromosome	CM018214.1:2055092..2055167 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
scaffold304.1	supercontig	scaffold304.1:1009431..1009508 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A13	chromosome	A13:2031881..2031958 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A13	chromosome	Ghir_A13:2066087..2066164 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A13	chromosome	A13:2176080..2176157 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A13	chromosome	A13:2282261..2282338 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A13	chromosome	A13:2094380..2094457 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A13	chromosome	Gbar_A13:2115560..2115635 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A13	chromosome	A13:2073975..2074050 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017622.1	chromosome	CM017622.1:2248351..2248426 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017700.1	chromosome	CM017700.1:1904364..1904439 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A13	chromosome	A13:2290888..2290965 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908461	DQ908461	Gossypium hirsutum	sequence_feature

Sequence

>Gh522 ID=Gh522; Name=Gh522; organism=Gossypium hirsutum; type=genetic_marker; length=78bp
GATGGCTTGTTGGGTTAAGTAGTGAGAGAGAGAGAGAGAGAGAGAGAGAA
GGCACTCATTTTGTTCCATTAGGAACTA

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Gh522, Gh522 (genetic_marker) Gossypium hirsutum