Gh521, Gh521 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh521
Genbank IDDQ908460
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908460
Source Typegenomic
Repeat MotifAG(13)
Primer 1Gh521_F: ACCTTATTTTCCTTATGACACACTACC
Primer 2Gh521_R: TTCTGGCTGGGTGTTTGATTGATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908460
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:8728409..8728512 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:8149694..8149797 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_11chromosomeD10_11:8107322..8107431 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr7chromosomeAt_chr7:9139923..9140026 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:8710224..8710327 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:8528752..8528853 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:8411137..8411240 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:8589950..8590053 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:8527290..8527393 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:10207750..10207853 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12548supercontigscaffold12548:12149..12252 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:8367026..8367129 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:8383041..8383144 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:8287623..8287722 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:8641287..8641384 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:8416990..8417093 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:8747811..8747914 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr07chromosomechr07:7165925..7166164 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:7650457..7650566 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:6916270..6916382 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:10059379..10059482 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeGh521:1..785 .
Chr07:7912468..7913326 +		n/a
Chr7chromosomeGh521:1..785 .
Chr7:43367054..43367912 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908460DQ908460Gossypium hirsutumsequence_feature


Sequence
>Gh521 ID=Gh521; Name=Gh521; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
ACCTTATTTTCCTTATGACACACTACCTTAATTCATTTTCTCTCAATAAA
GAGAGAGAGAGAGAGAGAGAGAGAGAAATAATCCATCAATCAAACACCCA
GCCAGAA