Gh519, Gh519 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh519
Genbank IDDQ908458
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908458
Source Typegenomic
Repeat MotifTC(12)
Primer 1Gh519_F: CCCAAACTTATTTTGAACTCATGCTC
Primer 2Gh519_R: TGCCTTGGTAATGCAACATTTGAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908458
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:32136428..32136595 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:89625973..89626162 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Ghir_A04chromosomeGhir_A04:16555652..16555784 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
At03chromosomeAt03:52031549..52031686 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:52034757..52034894 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6617supercontigscaffold6617:38974..39106 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2122supercontigscaffold2122:27738..27903 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10681supercontigscaffold10681:192670..192815 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10681supercontigscaffold10681:189289..189431 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold486supercontigscaffold486:32472..32609 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold486supercontigscaffold486:29264..29401 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:31297009..31297154 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:58640548..58640685 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:31895151..31895316 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:15026841..15026973 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:32094078..32094243 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:32753415..32753582 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:34113595..34113774 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:32494982..32495151 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
B_11chromosomeB_11:30661628..30661798 +Gossypium anomalum (B1) genome NSF_v1n/a
F11chromosomeF11:27115152..27115312 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908458DQ908458Gossypium hirsutumsequence_feature


Sequence
>Gh519 ID=Gh519; Name=Gh519; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
CCCAAACTTATTTTGAACTCATGCTCATACTTTTTTCTTTTTGGAGACTA
AGCAAACTTTTCTTCACTCTTTCTTCATCTCTCTCTCTCTCTCTCTCTCT
CTTTAAGCATGAACACATACATCTTCTTTGAAAATTTCCTCAAATGTTGC
ATTACCAAGGCA