Gh518, Gh518 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh518
Genbank IDDQ908457
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908457
Source Typegenomic
Repeat MotifATC(4)
Primer 1Gh518_F: CATGTCCACATATCCAGAACTAGG
Primer 2Gh518_R: GTGTTTCTACAGGTATGATTCAGCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908457
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:50855839..50855911 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:50887684..50887756 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_04chromosomeD5_04:5180744..5180816 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr12chromosomeDt_chr12:6726414..6726486 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:6695731..6695803 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:45890443..45890515 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:50654812..50654884 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:51575026..51575098 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:51606873..51606945 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:50551669..50551741 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:50583511..50583583 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:48528833..48528905 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:51952964..51953036 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D04chromosomeD04:51969050..51969122 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:49027907..49027979 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:51889325..51889394 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:49156630..49156702 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:49172716..49172788 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:52438261..52438333 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:52470106..52470178 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:5135802..5135874 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:5132706..5132778 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:6310677..6310749 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:48945212..48945283 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:20229000..20229072 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:48640873..48640945 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:48653418..48653490 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908457DQ908457Gossypium hirsutumsequence_feature


Sequence
>Gh518 ID=Gh518; Name=Gh518; organism=Gossypium hirsutum; type=genetic_marker; length=73bp
CATGTCCACATATCCAGAACTAGGGTTTTAATTATCATCATCATCATAGG
CTGAATCATACCTGTAGAAACAC