Gh517, Gh517 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh517
Genbank IDDQ908456
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908456
Source Typegenomic
Repeat MotifAGA(8)
Primer 1Gh517_F: GGATGGGAAAAATGCATACCATATATC
Primer 2Gh517_R: TGCAGGAGATGTAATTACAATGAAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908456
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:50887400..50887516 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:79022772..79022885 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:48005077..48005191 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:74310584..74310691 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:41331985..41332090 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:36634818..36634934 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:82322698..82322806 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:2553905..2554023 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:3606497..3606601 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold288.1supercontigscaffold288.1:30479..30595 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold251.1supercontigscaffold251.1:797516..797629 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:48258516..48258632 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:72193762..72193875 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:50251553..50251669 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:79237347..79237460 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:49563883..49563999 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:80486218..80486331 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:49999555..49999671 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:80685675..80685788 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:48094684..48094800 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:77255163..77255276 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:50763643..50763757 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23519supercontigscaffold23519:17954..18068 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21807supercontigscaffold21807:73386..73493 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:48884029..48884143 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:75085689..75085796 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:51259553..51259667 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:76501101..76501208 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:49001357..49001471 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:76437681..76437788 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:50519064..50519181 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:79757146..79757254 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49661205..49661320 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:76607841..76607948 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:51840603..51840719 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:82500113..82500226 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:81582513..81582621 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:84328654..84328762 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:47556981..47557086 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:67884854..67884966 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:48338732..48338836 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:49435806..49435920 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:37385375..37385493 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:28327228..28327437 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:34719993..34720207 +Gossypium lobatum (D7) genome ISU_v1n/a
F09chromosomeF09:68201600..68201713 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:129357566..129357675 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908456DQ908456Gossypium hirsutumsequence_feature


Sequence
>Gh517 ID=Gh517; Name=Gh517; organism=Gossypium hirsutum; type=genetic_marker; length=114bp
GGATGGGAAAAATGCATACCATATATCAACATAAGCTAAGAGAGAAAAAA
AATGGGAGTTCAAGAAGAAGAAGAAGAAGAAGAAGAAGCCTTCATTGTAA
TTACATCTCCTGCA