Gh516, Gh516 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh516
Genbank IDDQ908455
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908455
Source Typegenomic
Repeat MotifCA(11)
Primer 1Gh516_F: GGGTCCAAAATCATCATCGTTCAAG
Primer 2Gh516_R: TTCTGGACTCGGTTATTTGGCATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908455
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:99546576..99546681 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:99688058..99688170 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:96812852..96812954 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:10643925..10644030 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:17419290..17419388 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:11521585..11521702 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:45117037..45117152 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:4864435..4864540 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:4994331..4994443 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:88889853..88889958 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:56438082..56438196 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:102671195..102671300 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:56384129..56384244 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:103552107..103552212 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:103677648..103677760 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:102795395..102795500 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:102926758..102926870 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:97898671..97898776 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:98043736..98043848 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2363supercontigscaffold2363:55463..55565 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:97152722..97152824 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:98743929..98744031 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:98416955..98417054 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:56075905..56076022 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:55293745..55293888 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:100207624..100207724 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:56519591..56519704 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:105824384..105824489 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:105996131..105996243 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:112963088..112963184 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:106895583..106895681 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:51698654..51698759 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:16305958..16306071 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_11chromosomeChr_11:35441697..35441806 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:54584718..54584827 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:29549930..29550043 +Gossypium gossypioides (D6) genome ISU_v1n/a
E10chromosomeE10:17284316..17284428 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:81615338..81615440 -Gossypium longicalyx (F1) genome NSF_v1n/a
F10chromosomeF10:81723254..81723356 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908455DQ908455Gossypium hirsutumsequence_feature


Sequence
>Gh516 ID=Gh516; Name=Gh516; organism=Gossypium hirsutum; type=genetic_marker; length=104bp
GGGTCCAAAATCATCATCGTTCAAGATAAACACACACACACATACACACA
CACAACAACAACAACAACAACGCCTATATACATGCCAAATAACCGAGTCC
AGAA