Gh510, Gh510 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh510
Genbank ID	DQ908449
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908449
Source Type	genomic
Repeat Motif	TCT(6)
Primer 1	Gh510_F: ATTTGGCGGGGTCTGATTCTTTTC
Primer 2	Gh510_R: ATACAAAGGGAGAGAGCCAAGTAG
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908449

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A08	chromosome	A08:12035161..12035255 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
At_chr13	chromosome	At_chr13:30514377..30514471 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
At_chr4	chromosome	At_chr4:89442326..89442420 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A08	chromosome	A08:11426311..11426405 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A08	chromosome	Ghir_A08:12003591..12003685 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A08	chromosome	A08:11717419..11717513 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A08	chromosome	A08:12112155..12112249 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A08	chromosome	A08:11877164..11877258 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold73	supercontig	scaffold73:284245..284339 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_A08	chromosome	Gbar_A08:12063870..12063964 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
CM017617.1	chromosome	CM017617.1:12103701..12103792 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017643.1	chromosome	CM017643.1:12516722..12516840 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
A08	chromosome	A08:12555395..12555489 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr_09	chromosome	Chr_09:40430723..40430818 +	Gossypium harknessii (D2-2) genome ISU_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908449	DQ908449	Gossypium hirsutum	sequence_feature

Sequence

>Gh510 ID=Gh510; Name=Gh510; organism=Gossypium hirsutum; type=genetic_marker; length=95bp
ATTTGGCGGGGTCTGATTCTTTTCCATTAAAAGACCATGTCTTTTCTCTT
CTTCTTCTTCTTCTTCGTCTTCTACTTGGCTCTCTCCCTTTGTAT

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Gh510, Gh510 (genetic_marker) Gossypium hirsutum