Gh509, Gh509 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh509
Genbank IDDQ908448
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908448
Source Typegenomic
Repeat MotifCTTTTT(3)
Primer 1Gh509_F: TTCCTCCTGATACCATTCTTCTCC
Primer 2Gh509_R: ACTTGGTAGCAATCTTACGGTAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908448
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:95308249..95308342 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:93159918..93160011 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:22094037..22094393 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:9139655..9139748 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:84907988..84908081 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:98758118..98758211 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:99796656..99796749 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:98864382..98864475 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:93964836..93964929 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:89301217..89301310 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1426supercontigscaffold1426:92050..92143 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:93301800..93301893 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:95024668..95024761 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:94705087..94705180 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:102282160..102282516 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:96423447..96423540 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:101863084..101863177 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:102768980..102769336 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908448DQ908448Gossypium hirsutumsequence_feature


Sequence
>Gh509 ID=Gh509; Name=Gh509; organism=Gossypium hirsutum; type=genetic_marker; length=94bp
TTCCTCCTGATACCATTCTTCTCCAATTCTTATTGTTTCTTTTTCTTTTT
CTTTTTTCTTACTTTTAATTGCTACCGTAAGATTGCTACCAAGT