Gh507, Gh507 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh507
Genbank IDDQ908446
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908446
Source Typegenomic
Repeat MotifTCT(3)
Primer 1Gh507_F: TTATCAGGCATACTCTTGGAGTTGG
Primer 2Gh507_R: TTTTGGCACCTTAAGTAGACCACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908446
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:53596940..53597085 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:88984253..88984324 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:51084595..51084740 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:89192434..89192505 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:17299396..17299541 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:28163284..28163355 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:48709233..48709378 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr10chromosomeAt_chr10:25513522..25513667 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:41389636..41389707 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:69707672..69707743 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:53652815..53652960 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:97680625..97680696 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:53110574..53110719 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:96585357..96585428 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:53568151..53568296 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:93792803..93792874 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:50875101..50875246 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:90980818..90980889 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:52537537..52537682 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8891supercontigscaffold8891:126592..126663 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8891supercontigscaffold8891:130423..130568 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10302supercontigscaffold10302:122486..122631 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:50827635..50827780 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:87340524..87340595 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:53858254..53858399 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:90569107..90569178 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:90565202..90565347 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:94489873..94489944 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:101032083..101032154 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:89823080..89823151 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:89826899..89827044 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:50779529..50779674 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:53426434..53426579 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:98342514..98342585 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:102140463..102140534 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:100379523..100379594 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:15607182..15607327 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:76687730..76687802 -Gossypium anomalum (B1) genome NSF_v1n/a
B_11chromosomeB_11:76684582..76684727 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:50833693..50833838 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:34000865..34001010 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:30678116..30678270 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:30673863..30674008 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:32784079..32784224 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:86203367..86203512 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:76847305..76847377 -Gossypium longicalyx (F1) genome NSF_v1n/a
F11chromosomeF11:76839665..76839810 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908446DQ908446Gossypium hirsutumsequence_feature


Sequence
>Gh507 ID=Gh507; Name=Gh507; organism=Gossypium hirsutum; type=genetic_marker; length=72bp
TTATCAGGCATACTCTTGGAGTTGGGAAGCAATAATATTCTTCTTCTTGG
TGGTCTACTTAAGGTGCCAAAA