Gh493, Gh493 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh493
Genbank IDDQ908432
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908432
Source Typegenomic
Repeat MotifCA(16)
Primer 1Gh493_F: GAGCCTAGCTCAATGAGAAACATG
Primer 2Gh493_R: GTATGTTCAAAGTGCAAGGGTGAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908432
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:11724694..11724824 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:11195600..11195730 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr8chromosomeAt_chr8:36362300..36362430 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:11250779..11250909 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:11460533..11460661 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:10985243..10985373 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:11446409..11446539 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:11430383..11430513 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7272supercontigscaffold7272:152463..153011 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:11474878..11475006 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:11143418..11143548 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:11115955..11116083 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:11112121..11112249 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:11491955..11492085 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:11811380..11811507 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908432DQ908432Gossypium hirsutumsequence_feature


Sequence
>Gh493 ID=Gh493; Name=Gh493; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
GAGCCTAGCTCAATGAGAAACATGCATTTTTTTTTCAATAATTACAGAGT
GAACCTACTCACACACACACACACACACATACACACACACATTCTGTGAT
TGTTTCCCTCACCCTTGCACTTTGAACATAC