Gh492, Gh492 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh492
Genbank IDDQ908431
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908431
Source Typegenomic
Repeat MotifTCT(12)
Primer 1Gh492_F: AAGGCATGCTTTGTTTATATTCAAGCC
Primer 2Gh492_R: CCACTGTGATTAAACCCTTCTGATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908431
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:22971290..22971406 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:22015129..22015245 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:89369204..89369314 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:61357004..61357120 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:21279864..21279980 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:38854548..38854643 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:23409209..23409324 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:22381617..22381733 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:23105227..23105343 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:22399880..22399996 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:35278571..35278666 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1882supercontigscaffold1882:229732..229827 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2714supercontigscaffold2714:185482..185598 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:37841859..37841954 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:21933945..21934061 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:21971589..21971708 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:22371411..22371536 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:22962959..22963063 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:22142920..22143039 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:23481306..23481422 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:18492686..18492796 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:94877066..94877176 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:20740901..20741002 +Gossypium aridum (D4) genome ISU_v1n/a
E02chromosomeE02:68898340..68898595 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908431DQ908431Gossypium hirsutumsequence_feature


Sequence
>Gh492 ID=Gh492; Name=Gh492; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
AAGGCATGCTTTGTTTATATTCAAGCCTATTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCCTCTGAAACAGTGAGCAGTGCTCCATCAGAA
GGGTTTAATCACAGTGG