Gh487, Gh487 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh487
Genbank IDDQ908426
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908426
Source Typegenomic
Repeat MotifCA(17)
Primer 1Gh487_F: TGGGTAAACAAACATTGCATCAATTCC
Primer 2Gh487_R: TTTCCATTCATTAGACCTACTTCTTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908426
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:22289051..22289183 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:21128797..21128921 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr9chromosomeDt_chr9:47097386..47097518 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:21287629..21287761 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:21633224..21633358 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:21109130..21109262 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:21472033..21472165 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:21353545..21353679 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:22108768..22108890 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11199supercontigscaffold11199:46394..46516 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:21405880..21406004 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:21402621..21402745 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:21304023..21304155 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:21708229..21708357 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:21375448..21375572 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:21963070..21963202 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeGh487:1..338 .
Chr09:19741509..19741832 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908426DQ908426Gossypium hirsutumsequence_feature


Sequence
>Gh487 ID=Gh487; Name=Gh487; organism=Gossypium hirsutum; type=genetic_marker; length=135bp
TGGGTAAACAAACATTGCATCAATTCCAAAATACATGCACACACACACAC
ACACACACACACACACACACATATCTGTGTAAATCAATTCAGACAATATG
TCATAAATCCAAGAAGTAGGTCTAATGAATGGAAA